phyx published

Joseph Brown (postdoc), Joseph Walker (grad student), and myself just published phyx, a command line set of tools for phylogenetics, phylogenomics, and bioinformatics. See the publication here and get the code here.

phylogenomics and Caryophyllales in MBE

We have gotten the first data out from our Caryophyllales grant (together with 1KP data). We discuss gene and genome duplication, rates of molecular evolution and other fun things!

Yang, Y. M.J. Moore, S.F. Brockington, D.E. Soltis, G.K.-S. Wong, E.J. Carpenter, Y. Zhang, L. Chen, Z.-X. Yan, Y.-L. Xie, R.F. Sage, S. Covshoff, J.M. Hibberd, M.N. Nelson, and S.A. Smith. Dissecting molecular evolution in the highly diverse plant clade Caryophyllales using transcriptome sequencing. Molecular Biology and Evolution.

betalains in Caryophyllales accepted at New Phytologist

With the support of the Caryophyllales grant, we have published (Sam Brockington and Ya Yang as co-first authors).

Brockington S.F., Y. Yang, F. Gandia-Herrero, S. Covshoff, J.M. Hibberd, R.F. Sage, G.K.-S. Wong, M.J. Moore and S.A. Smith. Lineage specific gene radiations underly the evolution of novel betalain pigmentation in Caryophyllales. New Phytologist.