This contains a big list of all the programs in alphabetical order.
- AReA: area reconstruction
- the new blockmaker (for macosx) (makes paup and mrbayes blocks)
- ConAr: continuous character reconstruction
- GenBankRetriever: java program that gets multiple FASTA entries from GenBank
- keymap: key innovations and stochastic mapping
- lagrange: area reconstruction (with Richard Ree)
- mrbayes block maker
- paup block maker
- pebls (incl. jade): pebls evolutionary biology libraries
- phyutility: a phylogenetic utility program
- tREeBOOT: supertree bootstrapping
