phyu : phylogenetic utilities

the pebls library is intended to provide phylogenetic libraries for various languages. here are some programs demonstrating the libraries.

using: PhyC

  • rantree (makes a simple tree for a number of taxa, for figures, etc.)

using: PhyCPP

using: PhyJ

  • pj_reroot (reroots trees in phylip type files)
  • pj_printtree (prints ASCII trees)
  • concat (concatenates aligned fasta files)
  • gbparser (simplifies the ">" line in a genbank fasta file)