I am Stephen A. Smith, an evolutionary biologist and Assistant Professor at the University of Michigan, Ann Arbor. You can find out more information about the people in the lab here and the projects here. A lot of the research in the lab focuses on plant evolution, detecting and describing large scale patterns of evolution, examining differences in the rate of molecular evolution, and using new data sources like transcriptomes and genomes to address these questions. A great deal of this involves the development of new methods and new computational tools. My faculty page is here.
Happy to add Drew Larson and Lijun Zhao to the lab! Drew is co-advised with Chris Dick in the department.
Joseph Walker, Joseph Brown, and I have been working on tools for the command line for phylogenetics and phylogenomics. We have a good release and logo now. Check it out at github.
Ya Yang has been a member of the lab working on transcriptomics in Caryophyllales and will be moving on to a position at UMinn this fall. Congrats Ya! http://www.yangya.org/
James Pease has been a member of the lab working on the Andes and got a position at Wake Forest. Congrats! https://peaselab.github.io/
Two new postdocs will be joining the lab. More on that in a bit
Post-doctoral position to work on ongoing projects including phylogenetics,
phylogenomics, and evolution. In particular, there are projects involving
work with the Open Tree of Life, phylogenetic dataset construction, large
phylogenetic analyses, phylogenomic analyses involving genomes and
transcriptomes, orthology and homology searching, analysis of differential
gene expression using phylogenies, large comparative analysis, and
evolution of plants.
Qualifications: A PhD, good publication record, and strong background in
phylogenetics. The candidate will preferably have skills in computational
work and computer programming.
Start date: The candidate can start as early as August 2016 (preferable).
Length of position: The position is for one year with review for a second
year and possible extension.
Salary: Commiserate with experience.
To apply: via email, send a CV, statement of research interests, and names
and contact information for three references. Applications and inquiries
should be addressed to Stephen Smith at email@example.com.
Nice article in Scientific American about the OpenTreeOfLife with a figure that was made in the lab.
We just published a new paper in BMC Evolutionary Biology looking at first steps in characterizing conflict, concordance, and gene duplications in phylogenomic datasets. See it here.
There are some new members of the lab. Julia Oliviera is with us from Michael Moore at Oberlin and is working here in the lab on gene duplication over the summer. James Pease joined the lab as a postdoc working with Chris Dick and myself on Andean plants and transcriptomics. Welcome!
The lab (and others) went to Magee Marsh for a lab fieldtrip to see the migration. Here is a picture
Here is the list from Joseph Brown in the lab, including 56 species in total, and 19 warblers (although of the latter, 3 were by ear only, and 4 others were singletons I got on the walk out):
- Canada Goose
- Trumpeter Swan
- Double-crested Cormorant
- Great Blue Heron
- Great Egret
- Turkey Vulture
- Bald Eagle
- Red-tailed Hawk
We have gotten the first data out from our Caryophyllales grant (together with 1KP data). We discuss gene and genome duplication, rates of molecular evolution and other fun things!
Yang, Y. M.J. Moore, S.F. Brockington, D.E. Soltis, G.K.-S. Wong, E.J. Carpenter, Y. Zhang, L. Chen, Z.-X. Yan, Y.-L. Xie, R.F. Sage, S. Covshoff, J.M. Hibberd, M.N. Nelson, and S.A. Smith. Dissecting molecular evolution in the highly diverse plant clade Caryophyllales using transcriptome sequencing. Molecular Biology and Evolution.